Gulf Pipefish (Syngnathus scovelli) Genome Assembly Resources

Gulf Pipefish

These resources are presented and detailed in:

Small CM, Bassham S, Catchen J, Amores A, Fuiten AM, Brown RS, Jones AG, Cresko WA, 2016. The genome of the Gulf pipefish enables understanding of evolutionary innovations. Genome Biology 17, 258. doi:10.1186/s13059-016-1126-6

All raw sequencing data are available via NCBI BioProject Accession PRJNA355893.

Questions or comments can be directed to the corresponding author, William A. Cresko: wcreskonull@nulluoregon.edu

Resources

DateResource and Download LinkDescription
Dec 20th, 2016Chromosome Level AssemblyAssembled with ALLPATHS-LG and Chromonomer. Total length: 307,072,164 bp; Format: Gzipped FASTA
Dec 20th, 2016Chromosome Level Assembly AGPTabular file describing how assembly scaffolds are organized into linkage groups; Format: Gzipped AGP
Dec 20th, 2016Chromosome Level Assembly AnnotationPredicted gene annotations from MAKER2; 20,841 protein-coding genes; Format: Gzipped GFF
Dec 20th, 2016Scaffold Level AssemblyAssembled with ALLPATHS-LG. Total length: 307,019,064 bp; Format: Gzipped FASTA
Dec 20th, 2016Scaffold Level Assembly AGPTabular file describing how assembly contigs are organized into scaffolds; Format: Gzipped AGP
Dec 20th, 2016Scaffold Level Assembly AnnotationPredicted gene annotations from MAKER2; 20,841 protein-coding genes; Format: Gzipped GFF
Dec 20th, 2016Predicted Protein Coding SequencesProtein-Coding Gene predictions from MAKER2; 20,841 protein-coding genes; Format: Gzipped FASTA
Dec 20th, 2016NR BLASTP ResultsTop BLASTP Hits for Predicted Protein-coding Sequences; Format: Excel Workbook